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Liu, Y., Whipps, C.M., Nie, P., Gu, Z.M. (In Press) Myxobolus oralis sp. n. (Myxosporea: Bivalvulida) infecting the palate in the mouth of gibel carp Carassius auratus gibelio (Cypriniformes: Cyprinidae). Folia Parasitologica.

Whipps, C.M., Moss, L.G., Murray, K.N., Moss, J.B. (2014) Detection of autofluorescent Mycobacterium chelonae in living zebrafish. Zebrafish. 11(1):76-82.

Schaefer, J.J., Kirchgessner, M.S., Whipps, C.M., Mohammed, H.O., Bunting E.M., Wade, S.E. (2013). Toxoplasma gondii seroprevalence in New York State white-tailed deer (Odocoileus virginianus) Journal of Wildlife Diseases. 49(4):940-945.

Schaefer, J.J., Kirchgessner, M.S., Whipps, C.M., Mohammed, H.O., Bunting E.M., Wade, S.E. (In Press). Toxoplasma gondii seroprevalence in New York State white-tailed deer (Odocoileus virginianus) Journal of Wildlife Diseases.

Bauer, E.F., Whipps, C.M. (2013) Comparative analysis of native fish parasite communities of Adirondack lakes with and without introduced fish species. Journal of Parasitology. 99(4):603-609.

Kirchgessner, M.S. Dubovi, E.J., Whipps, C.M. (In Press) Disease Risk Surface for Coxiella burnetii Seroprevalence in White-Tailed Deer. Zoonoses and Public Health.

Reeve, B.C., Crespi, E.J., Whipps, C.M., Brunner, J.L. (2013) Natural stressors and ranavirus susceptibility in larval wood frogs (Rana sylvatica). EcoHealth. 10(2):190-200.

Peterson, T.S., Kent, M.L., Ferguson, J.A., Watral, V.G., Whipps, C.M. (2013) Comparison of fixatives and fixation time for PCR detection of Mycobacterium in zebrafish Danio rerio. Diseases of Aquatic Organisms. 104(2):113-120.

Whipps, C.M., Font, W.F. (2013) Interaction of two Myxozoan parasites from naked goby Gobiosoma bosc, in Lake Pontchartrain, Louisiana. Journal of Parasitology. 99(3):441-447.

Kirchgessner, M.S., Freer, H., Whipps, C.M., Wagner, B. (2013) Detection of Borrelia burgdorferi outer surface protein antibodies in wild white-tailed deer (Odocoileus virginianus) in New York and Pennsylvania, USA. Veterinary Immunology and Immunopathology. 153, 165-169.

Kirchgessner, M.S. Dubovi, E.J., Whipps, C.M. (2013) Spatial point pattern analyses of Bovine viral diarrhea virus infection in domestic livestock herds and concomitant seroprevalence in wild white-tailed deer (Odocoileus virginianus) in New York State, USA. Journal of Veterinary Diagnostic Investigation. 25(2), 226-233.

Liu, Y., Whipps, C.M., Gu, Z.M., Huang, M.J., He, C., Yang, H.L., Molnár, K. (2013) Myxobolus musseliusae (Myxozoa: Myxobolidae) from the gills of common carp Cyprinus carpio and revision of Myxobolus dispar recorded in China. Parasitology Research. 112(1), 289-296.

Kirchgessner, M.S. Dubovi, E.J., Whipps, C.M. (2012) Seroepidemiology of Coxiella burnetii in wild white-tailed deer (Odocoileus virginianus) in New York, United States. Vector-Borne and Zoonotic Diseases. 12(11), 942-947.

Whipps, C.M., Lieggi, C., Wagner, R.A. (2012) Mycobacteriosis in zebrafish colonies. Institute for Laboratory Animal Research Journal. 53(2), 95-105.

Kirchgessner, M.S., Dubovi, E.J., Porter, W.F., Zylich, N.C., Whipps, C.M. (2012) Prevalance and spatial distribution of antibodies to Bovine Viral Diarrhea Virus and Coxiella burnetii in white-tailed deer (Odocoileus virginianus) in New York and Pennsylvania. Journal of Zoo and Wildlife Medicine. 43(3), 466-472.

Whipps, C.M., Fournie, J.W., Morrison, D.A., Azevedo, C., Matos, E., Thebo, P., Kent, M.L. 2012. Phylogeny of fish-infecting Calyptospora species (Apicomplexa: Eimeriorina). Parasitology Research, 111(3), 1331-1342.

Liu, Y., Whipps, C.M., Gu, Z.M., Zeng, C., Huang, M.J. (2012) Myxobolus honghuensis n. sp. (Myxosporea: Bivalvulida) parasitizing the pharynx of allogynogenetic gibel carp Carassius auratus gibelio (Bloch) from Honghu Lake, China. Parasitology Research. 110(4):1331-1336

Whipps, C.M. (2011) Interrenal disease in bluegills (Lepomis macrochirus) caused by a new genus and species of myxozoan. Journal of Parasitology. 97(6), 9-12.

Liu, Y., Whipps, C.M., Liu, W.S., Zeng, L.B., Gu, Z.M. (2011) Supplemental diagnosis of a myxozoan parasite from common carp Cyprinus carpio; synonymy of Thelohanellus xinyangensis with Thelohanellus kitauei. Veterinary Parasitology. 178(3-4), 355-359.

Liu, Y., Whipps, C.M., Gu, Z.M., Zeng, L.B. (2010) Myxobolus turpisrotundus (Myxosporea: Bivalvulida) spores with caudal appendages: investigating the validity of the genus Henneguya with morphological and molecular evidence. Parasitology Research. 107(3), 699-706.

Whipps, C.M., Boorom, K., Bermudez, L.E., Kent, M.L. (2010) Molecular characterization of Blastocystis species in Oregon identifies multiple subtypes. Parasitology Research. 106(4), 827-832.

Gunter N.L., Whipps, C.M., Adlard, R.D. 2009. Ceratomyxa (Myxozoa: Bivalvulida): robust taxon or genus of convenience? International Journal for Parasitology. 39(12), 1395-1405.

Gozlan, R.E., Whipps, C.M., Andreou, D., Arkush, K.D. 2009. Identification of the cyprinid rosette-like agent as Sphaerothecum destruens, a multihost fish pathogen. International Journal for Parasitology. 39(10), 1055-1058.

Jones II, M.S., Whipps, C.M., Ganac, R.D., 1, Hudson, N.R., Boroom, K. 2009. Association of Blastocystis Subtype 3 and 1 with Patients from an Oregon Community Presenting with Chronic Gastrointestinal Illness. Parasitology Research. 104(2), 341-345.

Kent, M.L., Feist, S.W., Harper, C., Hoogstraten-Miller, S., Law, J.M., Sánchez-Morgado, J.M., Tanguay, R.L. Sanders, G.E., Spitsbergen, J.M., Whipps, C.M. 2009. Recommendations for Control of Pathogens and Infectious Diseases in Fish Research Facilities. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology. 149(2), 240–248.

Whipps, C.M., Matthews, J.L., Kent, M.L. 2008. Distribution and genetic characterization of Mycobacterium chelonae in laboratory zebrafish (Danio rerio). Diseases of Aquatic Organisms. 82(1), 45-54.

Ferguson, J.A., Atkinson, S.D., Whipps, C.M., Kent, M.L. 2008. Molecular and morphological analysis of Myxobolus spp. of salmonid fishes with the description of Myxobolus fryeri n. sp. Journal of Parasitology. 94(6), 1322-1334.

Roberts, J.F., Whipps, C.M., Bartholomew, J.L., Jacobson, E.R., and Schneider, L. 2008. Myxidium scripta n. sp. identified in urinary and biliary tract of Louisiana farmed Red Eared Slider turtles Trachemys scripta elegans. Diseases of Aquatic Organisms. 80(3), 199-209.

Zhao, Y., Sun, C., Kent, M.L., Deng, J., Whipps, C.M. 2008. Description of a new species of Myxobolus (Myxozoa: Myxobolidae) based on morphological and molecular data. Journal of Parasitology. 94(3), 737-742.

Jones II, M.S., Ganac, R.D., Hiser, G., Hudson, N.R., Le, A., Whipps, C.M. 2008. Detection of Blastocystis from stool samples using real-time PCR. Parasitology Research. 103(3), 551-557.

Work, T.M., Takata, G., Whipps, C.M., Kent, M.L. 2008. Henneguya akule n. sp. in the big eyed scad (Selar crumenophthalmus) from Hawaii. Journal of Parasitology. 94(2), 524-529.

Ostland, V.E., Watral, V.G., Whipps, C.M., Austin, F., St. Hilaire, S., Westerman, M.E., and Kent, M.L. 2008. Biochemical, molecular, and virulence studies of select Mycobacterium marinum strains in hybrid striped bass (Morone chrysops x M. saxatilis) and zebrafish (Danio rerio). Diseases of Aquatic Organisms. 79(2), 107-118.

Zhao, Y., Zhou, Y., Kent, M.L., and Whipps, C.M. 2008. Replacement of the Preoccupied Name Davisia Laird 1953, and Description of a New Myxozoan Species (Myxosporea: Sinuolineidae) From Sebastiscus marmoratus (Cuvier, 1829) in the East China Sea. Journal of Parasitology. 94(1), 269-279

Bildfell, R.J., Whipps, C.M., Gillin, C.M., and Kent, M.L. 2007. DNA-based Identification of a Hepatic Trematode in an Elk Calf. Journal of Wildlife Diseases. 43(4), 762-769.

Whipps, C.M., Butler, W.R., Pourahmad, F., Watral, V.G., and Kent M.L. 2007. Molecular systematics support the revival of Mycobacterium salmoniphilum (ex Ross 1960) sp. nov., nom. rev., a species closely related to Mycobacterium chelonae. International Journal of Systematic and Evolutionary Microbiology. 57(11), 2525-2531.

Whipps, C.M., Dougan, S.T., and Kent, M.L. 2007. Mycobacterium haemophilum infections of zebrafish (Danio rerio) in research facilities. FEMS Microbiology Letters. 270(1), 21-26.

Whipps, C.M., and Kent, M.L. 2006. Phylogeography of the cosmopolitan marine parasite Kudoa thyrsites (Myxozoa: Myxosporea). Journal of Eukaryotic Microbiology. 53(5), 364-373.

Gunter, N.L., Cribb, T.H., Whipps, C.M., and Adlard, R.D. 2006. Characterisation of Kudoa monodactyli n. sp. (Myxosporea: Multivalvulida) from the Muscle of Monodactylus argenteus (Teleostei: Monodactylidae) from Moreton Bay, Queensland, Australia. Journal of Eukaryotic Microbiology. 53(5), 374-378.

Jirků, M., Bolek, M.G., Whipps, C.M., Janovy, J., Kent, M.L., and Modrý, D. 2006. A new species of Myxidium (Myxosporea: Myxidiidae), from the western chorus frog, Pseudacris triseriata triseriata, and Blanchard’s cricket frog, Acris crepitans blanchardi (Hylidae) from eastern Nebraska USA: morphology, phylogeny and critical comments on amphibian Myxidium taxonomy. Journal of Parasitology. 92(3), 611-619.

Whipps, C.M., and Diggles, B.K. 2006. Kudoa alliaria in flesh of Argentinian Hoki Macruronus magellanicus (Gadiformes; Merlucciidae). Diseases of Aquatic Organisms. 69(2-3), 259-263.

Poort, M.J., Whipps, C.M., Watral, V.G. Font, W.F., and Kent, M.L. 2006. Description of a Mycobacterium species in non-native poeciliids in Hawaii using DNA sequences. Journal of Fish Diseases. 29(3), 181-185.

Whipps, C.M., Burton, T., Watral, V.G., St-Hilaire, S., and Kent, M.L. 2006. Assessing the accuracy of a polymerase chain reaction test for Ichthyophonus hoferi in Yukon River Chinook salmon (Oncorhynchus tshawytscha). Diseases of Aquatic Organisms. 68(2), 141-147.

Whipps, C.M., and Kent, M.L. 2006. Polymerase chain reaction detection of Pseudoloma neurophilia, a common microsporidian of zebrafish (Danio rerio) reared in research laboratories. Journal of the American Association for Laboratory Animal Science. 45(1), 36-39.

Adlard, R.D., Bryant, M.S., Whipps, C.M. and Kent, M.L. 2005 Multivalvulid myxozoans from eastern Australia: Three new species of Kudoa from scombrid and labrid fishes of the Great Barrier Reef, Queensland Australia. Journal of Parasitology. 91(5), 1138-1142.

Garner, M.M., Bartholomew, J.L., Whipps, C.M., Nordhausen, R.W., and Raiti, P. 2005. Renal myxozoanosis in Crowned River turtles Hardella thurjii: description of the putative agent, Myxidium hardella n. sp. by histopathology, electron microscopy, and DNA sequencing. Veterinary Pathology. 42, 589-595.

Kent, M.L., Whipps, C.M., Matthews, J.L., Florio, D., Watral, V.G., Bishop-Stewart, J.K., Poort, M.J., and Bermudez, L. 2004. Mycobacteriosis in zebrafish (Danio rerio) research facilities. Comparative biochemistry and physiology. Toxicology & pharmacology. 138(3), 383-390.

Kent, M.L., Watral, V.G., Whipps, C.M., Cunningham, M.E., Criscione, C.D., Heidel, J.R., Curtis, L.R., Spitsbergen, J., and Markle, D.F. 2004. Digenean metacercariae and a myxozoan (Myxobolus sp.) associated with skeletal lesions in cyprinid fishes from the Willamette River, Oregon. Journal of Aquatic Animal Health. 16(3), 116-129.

Diamant, A., Whipps, C.M., and Kent M.L. 2004. A new species of Sphaeromyxa (Myxosporea: Sphaeromyxina: Sphaeromyxidae) in devil firefish, Pterois miles (Scorpaenidae), from the northern Red Sea: morphology, ultrastructure, and phylogeny. Journal of Parasitology. 90(6), 1434-1442.

Koie, M., Whipps, C.M., and Kent, M.L. 2004. Ellipsomyxa gobii (Myxozoa: Ceratomyxidae) in the common goby Pomatoschistus microps (Teleostei: Gobiidae) uses Nereis spp. (Annelida: Polychaeta) as invertebrate hosts. Folia Parasitologica 51, 14-18.

Whipps, C.M., El-Matbouli, M., Hedrick, R.P., Blazer, V., and Kent, M.L. 2004. Myxobolus cerebralis internal transcribed spacer 1 (ITS-1) sequences support recent spread of the parasite to North America and within Europe. Diseases of Aquatic Organisms. 60(2), 105-108.

Yokoyama, H., Whipps, C.M., Kent, M.L., Mizuno, K. and Kawakami, H. 2004. Kudoa thyrsites from Japanese flounder and Kudoa lateolabracis n. sp. from Chinese sea bass: Causative myxozoans of post-mortem myoliquefaction. Fish Pathology (Gyoby o Kenky u). 39(2), 79-85.

Whipps, C.M., Grossel, G., Adlard, R.D., Yokoyama, H., Bryant, M.S., Munday, B.L., and Kent M.L. 2004. Phylogeny of the Multivalvulidae (Myxozoa: Myxosporea) based upon comparative rDNA sequence analysis. Journal of Parasitology. 90(3), 618-622.

Blaylock, R.B., Bullard, S.A., and Whipps, C.M. 2004. Kudoa hypoepicardialis n. sp. (Myxozoa: Kudoidae) and associated lesions from the heart of seven perciform fishes in the northern Gulf of Mexico. Journal of Parasitology. 90(3), 584-593.

Whipps, C.M., Adlard, R.D., Bryant, M.S., Lester, R.J.G., Findlay, V. and Kent, M.L. 2003. First Report of Three Kudoa Species from Eastern Australia: Kudoa thyrsites from Mahi mahi (Coryphaena hippurus), Kudoa amamiensis and Kudoa minithyrsites n. sp. from Sweeper (Pempheris ypsilychnus). Journal of Eukaryotic Microbiology. 50 (3), 215-219.

Whipps, C.M., Watral, V.G., and Kent M.L. 2003. Characterization of a Mycobacterium sp. in rockfish, Sebastes alutus (Gilbert) and Sebastes reedi (Westrheim & Tsuyuki), using rDNA sequences. Journal of Fish Diseases. 26, 241-245.

Whipps, C.M., Adlard, R.D., Bryant, M.S. and Kent, M.L. 2003. Two unusual myxozoans, Kudoa quadricornis n. sp. (Multivalvulida) from the muscle of goldspotted trevally (Carangoides fulvoguttatus) and Kudoa permulticapsula  n. sp. (Multivalvulida) from the muscle of Spanish mackerel (Scomberomorus commerson) from the Great Barrier Reef, Australia. Journal of Parasitology. 89(1), 168-173.

Criscione, C.D. Watral, V., Whipps, C.M., Blouin, M.S., Jones, S.R.M., and Kent, M.L. 2002. Ribosomal DNA sequences indicate isolated populations of Ichthyophonus hoferi in the northeastern Pacific Ocean. Journal of Fish Diseases. 25(10), 575-582.

Shaw, R.W., Kent, M.L., Brown, A.M.V., Whipps, C.M., Adamson, M.L. 2000. Experimental and natural host specificity of Loma salmonae. Diseases of Aquatic Organisms. 40(2), 131-136.